Student-produced Tutorials

Amplicon Sequence QC with CLC Genomics Workbench

By Teresa Tiedge (BIT 477/577 student, Fall 2021)

• Video (10:51 min)
• Script
• QC Report and Supplementary QC.

Analyses with EPI2ME

By Temi Ibitoye (BIT 477/577 student, Fall 2021)

• Video (6:31 min)
• Script

Nephele and phyloseq

By Jenny Ding (BIT 477/577 student, Fall 2021)

• Video (8:57 min)
• Script
• R code

Nephele Upload and Workspace

By Daniel Watson (BIT 477/577 student, Fall 2021)

• Video (6:05 min)
• Script

Nanopore Sequencing Overview

By BIT 477/577 student, Fall 2021

• Video (7:16 min)
• Script

Nephele Overview

By Ashley Johnson (BIT 477/577 student Fall 2021)

• Video (15:43 min)
• Script

DADA2 Demonstration Using R

By BIT 477/577 student, Fall 2020

• Video (5:02 min)
• Script
• Slides
• Code

Using QIIME2 to View and Analyze Metagenomic Data

By David Ramotowski (BIT 477/577 student, Fall 2020)

• Video (8:34 min)
• Script

Nephele Microbiome Analysis Overview

By BIT 477/577 student, Fall 2020

• Video (9:46 min)
• Script

Introduction to Diversity Metrics

By BIT 477/577 student, Fall 2020

• Video (5:31 min)
• Script

Nephele Tutorial

By Micaela Robson (BIT 477/577 student, Fall 2020)

• Video (7:32 min)
• Script

Metagenomic Analysis with KBase

By Ourania Raftopoulou (BIT 477/577 student, Fall 2020)

• Video (7:44 min)
• Script
• Narrative

Nephele Introduction and Tutorial

By Savanna Smith (BIT 477/577 student, Fall 2020)

• Video Part 1 (3:38 min) and Part 2 (3:21 min)
• Video and data links
• Script

Navigating the NCBI Sequence Read Archive (SRA)

By Victoria McQuade (BIT 477/577 student, Fall 2020)

• Video (5:19 min)
• Script

This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.